#!/bin/bash

if [[ $# -ne 2 ]]; then
    echo "The format is as follows:"
    echo "bash build.sh buildpath installpath"
    echo ":param buildpath: 应用构建绝对路径"
    echo ":param installpath: 应用安装绝对路径"
    exit 1
fi

[[ ! "$1" =~ ^/.* || "$1" = "/" ]] &&  echo "请输入正确的构建路径" && exit 1
[[ ! "$2" =~ ^/.* || "$2" = "/" ]] &&  echo "请输入正确的安装路径" && exit 1

create_dir()
{
    local path=$1
    [[ "$path" =~ .*/$ ]] && path=${path%/*}
    if [[ ! -d "$path" && ! -f "$path" ]]; then mkdir -p $path; else path=$path`date "+%y%m%d%H%M%S"` && mkdir -p $path; fi
    echo $path
}

buildpath=$(create_dir $1)
installpath=$(create_dir $2)

yum install -y m4 environment-modules systemd-devel zlib zlib-devel
source /etc/profile
module purge

set -e
dep_dir="dependency"
bash $dep_dir/bisheng-compiler-2.1.0.sh $buildpath $installpath
module use $installpath/bisheng-compiler-2.1.0
module load $installpath/bisheng-compiler-2.1.0/bisheng_modulefiles

bash bwa-0.7.17.sh $buildpath $installpath
mkdir -p pkg/bwa-0.7.17-hpc && cp -r $installpath/* pkg/bwa-0.7.17-hpc/
cat>"pkg/bwa-0.7.17-hpc/run.sh"<<EOF
yum install -y \
m4 environment-modules systemd-devel patch autoconf \
automake libtool python python-devel python-setuptools \
python2-pip wget tar libatomic gcc-c++ zlib zlib-devel
source /etc/profile &> /dev/null 
current_dir=\$(cd "\$(dirname "\${BASH_SOURCE[0]}")" &> /dev/null && pwd)
for d in \$(ls \$current_dir)
do
    [[ ! -f "\$current_dir/\$d" ]] && cd \$current_dir/\$d && module use \$(pwd) && module load \$(pwd)/*modulefiles
done

echo -e "\033[1;32;1mBwa environment initialization completed.\n\033[0m"
EOF
cd pkg/ && tar zcvf bwa-0.7.17-hpc.tar.gz bwa-0.7.17-hpc

rm -rf $buildpath $installpath
